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setup cancer laurent

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Laureηt 2023-01-18 17:34:29 +01:00
parent 956129586d
commit c4d9fcf3f7
Signed by: Laurent
SSH key fingerprint: SHA256:kZEpW8cMJ54PDeCvOhzreNr4FSh6R13CMGH/POoO8DI
9 changed files with 979 additions and 2 deletions
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12
.editorconfig Normal file
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root = true
[*]
indent_style = space
indent_size = 4
end_of_line = lf
charset = utf-8
trim_trailing_whitespace = true
insert_final_newline = true
[*.{json,yaml,yml,toml}]
indent_size = 2

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.envrc Normal file
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use nix

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.gitattributes vendored Normal file
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# https://github.com/alexkaratarakis/gitattributes/blob/master/Python.gitattributes
# Basic .gitattributes for a python repo.
# Source files
# ============
*.pxd text diff=python
*.py text diff=python
*.py3 text diff=python
*.pyw text diff=python
*.pyx text diff=python
*.pyz text diff=python
*.pyi text diff=python
# Binary files
# ============
*.db binary
*.p binary
*.pkl binary
*.pickle binary
*.pyc binary export-ignore
*.pyo binary export-ignore
*.pyd binary
# Jupyter notebook
*.ipynb text
# Note: .db, .p, and .pkl files are associated
# with the python modules ``pickle``, ``dbm.*``,
# ``shelve``, ``marshal``, ``anydbm``, & ``bsddb``
# (among others).

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.gitignore vendored
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__pycache__
data
.direnv
data
*.blend1
# https://github.com/github/gitignore/blob/main/Python.gitignore
# Basic .gitignore for a python repo.
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# C extensions
*.so
# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/
# Translations
*.mo
*.pot
# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal
# Flask stuff:
instance/
.webassets-cache
# Scrapy stuff:
.scrapy
# Sphinx documentation
docs/_build/
# PyBuilder
.pybuilder/
target/
# Jupyter Notebook
.ipynb_checkpoints
# IPython
profile_default/
ipython_config.py
# pyenv
# For a library or package, you might want to ignore these files since the code is
# intended to run in multiple environments; otherwise, check them in:
# .python-version
# pipenv
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
# However, in case of collaboration, if having platform-specific dependencies or dependencies
# having no cross-platform support, pipenv may install dependencies that don't work, or not
# install all needed dependencies.
#Pipfile.lock
# poetry
# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
# This is especially recommended for binary packages to ensure reproducibility, and is more
# commonly ignored for libraries.
# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
#poetry.lock
# pdm
# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
#pdm.lock
# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
# in version control.
# https://pdm.fming.dev/#use-with-ide
.pdm.toml
# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
__pypackages__/
# Celery stuff
celerybeat-schedule
celerybeat.pid
# SageMath parsed files
*.sage.py
# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/
# Spyder project settings
.spyderproject
.spyproject
# Rope project settings
.ropeproject
# mkdocs documentation
/site
# mypy
.mypy_cache/
.dmypy.json
dmypy.json
# Pyre type checker
.pyre/
# pytype static type analyzer
.pytype/
# Cython debug symbols
cython_debug/
# PyCharm
# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
# and can be added to the global gitignore or merged into this file. For a more nuclear
# option (not recommended) you can uncomment the following to ignore the entire idea folder.
#.idea/

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.vscode/settings.json vendored Normal file
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{
"nixEnvSelector.nixFile": "${workspaceRoot}/shell.nix"
}

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poetry.lock generated Normal file
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# This file is automatically @generated by Poetry and should not be changed by hand.
[[package]]
name = "bandit"
version = "1.7.4"
description = "Security oriented static analyser for python code."
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
{file = "bandit-1.7.4-py3-none-any.whl", hash = "sha256:412d3f259dab4077d0e7f0c11f50f650cc7d10db905d98f6520a95a18049658a"},
{file = "bandit-1.7.4.tar.gz", hash = "sha256:2d63a8c573417bae338962d4b9b06fbc6080f74ecd955a092849e1e65c717bd2"},
]
[package.dependencies]
colorama = {version = ">=0.3.9", markers = "platform_system == \"Windows\""}
GitPython = ">=1.0.1"
PyYAML = ">=5.3.1"
stevedore = ">=1.20.0"
[package.extras]
test = ["beautifulsoup4 (>=4.8.0)", "coverage (>=4.5.4)", "fixtures (>=3.0.0)", "flake8 (>=4.0.0)", "pylint (==1.9.4)", "stestr (>=2.5.0)", "testscenarios (>=0.5.0)", "testtools (>=2.3.0)", "toml"]
toml = ["toml"]
yaml = ["PyYAML"]
[[package]]
name = "black"
version = "22.12.0"
description = "The uncompromising code formatter."
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
{file = "black-22.12.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9eedd20838bd5d75b80c9f5487dbcb06836a43833a37846cf1d8c1cc01cef59d"},
{file = "black-22.12.0-cp310-cp310-win_amd64.whl", hash = "sha256:159a46a4947f73387b4d83e87ea006dbb2337eab6c879620a3ba52699b1f4351"},
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{file = "black-22.12.0-cp37-cp37m-win_amd64.whl", hash = "sha256:1f58cbe16dfe8c12b7434e50ff889fa479072096d79f0a7f25e4ab8e94cd8350"},
{file = "black-22.12.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:77d86c9f3db9b1bf6761244bc0b3572a546f5fe37917a044e02f3166d5aafa7d"},
{file = "black-22.12.0-cp38-cp38-win_amd64.whl", hash = "sha256:82d9fe8fee3401e02e79767016b4907820a7dc28d70d137eb397b92ef3cc5bfc"},
{file = "black-22.12.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:101c69b23df9b44247bd88e1d7e90154336ac4992502d4197bdac35dd7ee3320"},
{file = "black-22.12.0-cp39-cp39-win_amd64.whl", hash = "sha256:559c7a1ba9a006226f09e4916060982fd27334ae1998e7a38b3f33a37f7a2148"},
{file = "black-22.12.0-py3-none-any.whl", hash = "sha256:436cc9167dd28040ad90d3b404aec22cedf24a6e4d7de221bec2730ec0c97bcf"},
{file = "black-22.12.0.tar.gz", hash = "sha256:229351e5a18ca30f447bf724d007f890f97e13af070bb6ad4c0a441cd7596a2f"},
]
[package.dependencies]
click = ">=8.0.0"
mypy-extensions = ">=0.4.3"
pathspec = ">=0.9.0"
platformdirs = ">=2"
tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
[package.extras]
colorama = ["colorama (>=0.4.3)"]
d = ["aiohttp (>=3.7.4)"]
jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
uvloop = ["uvloop (>=0.15.2)"]
[[package]]
name = "cfgv"
version = "3.3.1"
description = "Validate configuration and produce human readable error messages."
category = "dev"
optional = false
python-versions = ">=3.6.1"
files = [
{file = "cfgv-3.3.1-py2.py3-none-any.whl", hash = "sha256:c6a0883f3917a037485059700b9e75da2464e6c27051014ad85ba6aaa5884426"},
{file = "cfgv-3.3.1.tar.gz", hash = "sha256:f5a830efb9ce7a445376bb66ec94c638a9787422f96264c98edc6bdeed8ab736"},
]
[[package]]
name = "click"
version = "8.1.3"
description = "Composable command line interface toolkit"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
{file = "click-8.1.3-py3-none-any.whl", hash = "sha256:bb4d8133cb15a609f44e8213d9b391b0809795062913b383c62be0ee95b1db48"},
{file = "click-8.1.3.tar.gz", hash = "sha256:7682dc8afb30297001674575ea00d1814d808d6a36af415a82bd481d37ba7b8e"},
]
[package.dependencies]
colorama = {version = "*", markers = "platform_system == \"Windows\""}
[[package]]
name = "colorama"
version = "0.4.6"
description = "Cross-platform colored terminal text."
category = "dev"
optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
files = [
{file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
{file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
]
[[package]]
name = "commonmark"
version = "0.9.1"
description = "Python parser for the CommonMark Markdown spec"
category = "main"
optional = false
python-versions = "*"
files = [
{file = "commonmark-0.9.1-py2.py3-none-any.whl", hash = "sha256:da2f38c92590f83de410ba1a3cbceafbc74fee9def35f9251ba9a971d6d66fd9"},
{file = "commonmark-0.9.1.tar.gz", hash = "sha256:452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60"},
]
[package.extras]
test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
[[package]]
name = "distlib"
version = "0.3.6"
description = "Distribution utilities"
category = "dev"
optional = false
python-versions = "*"
files = [
{file = "distlib-0.3.6-py2.py3-none-any.whl", hash = "sha256:f35c4b692542ca110de7ef0bea44d73981caeb34ca0b9b6b2e6d7790dda8f80e"},
{file = "distlib-0.3.6.tar.gz", hash = "sha256:14bad2d9b04d3a36127ac97f30b12a19268f211063d8f8ee4f47108896e11b46"},
]
[[package]]
name = "filelock"
version = "3.9.0"
description = "A platform independent file lock."
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
{file = "filelock-3.9.0-py3-none-any.whl", hash = "sha256:f58d535af89bb9ad5cd4df046f741f8553a418c01a7856bf0d173bbc9f6bd16d"},
{file = "filelock-3.9.0.tar.gz", hash = "sha256:7b319f24340b51f55a2bf7a12ac0755a9b03e718311dac567a0f4f7fabd2f5de"},
]
[package.extras]
docs = ["furo (>=2022.12.7)", "sphinx (>=5.3)", "sphinx-autodoc-typehints (>=1.19.5)"]
testing = ["covdefaults (>=2.2.2)", "coverage (>=7.0.1)", "pytest (>=7.2)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)"]
[[package]]
name = "flake8"
version = "5.0.4"
description = "the modular source code checker: pep8 pyflakes and co"
category = "dev"
optional = false
python-versions = ">=3.6.1"
files = [
{file = "flake8-5.0.4-py2.py3-none-any.whl", hash = "sha256:7a1cf6b73744f5806ab95e526f6f0d8c01c66d7bbe349562d22dfca20610b248"},
{file = "flake8-5.0.4.tar.gz", hash = "sha256:6fbe320aad8d6b95cec8b8e47bc933004678dc63095be98528b7bdd2a9f510db"},
]
[package.dependencies]
mccabe = ">=0.7.0,<0.8.0"
pycodestyle = ">=2.9.0,<2.10.0"
pyflakes = ">=2.5.0,<2.6.0"
[[package]]
name = "flake8-docstrings"
version = "1.6.0"
description = "Extension for flake8 which uses pydocstyle to check docstrings"
category = "dev"
optional = false
python-versions = "*"
files = [
{file = "flake8-docstrings-1.6.0.tar.gz", hash = "sha256:9fe7c6a306064af8e62a055c2f61e9eb1da55f84bb39caef2b84ce53708ac34b"},
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]
[package.dependencies]
flake8 = ">=3"
pydocstyle = ">=2.1"
[[package]]
name = "flake8-pyproject"
version = "1.2.2"
description = "Flake8 plug-in loading the configuration from pyproject.toml"
category = "dev"
optional = false
python-versions = ">= 3.6"
files = [
{file = "flake8_pyproject-1.2.2-py3-none-any.whl", hash = "sha256:52d412219e7db6227faa654675b1435947b11d49b453f3eced760f19bdd6f06a"},
]
[package.dependencies]
Flake8 = ">=5"
TOMLi = {version = "*", markers = "python_version < \"3.11\""}
[package.extras]
dev = ["pyTest", "pyTest-cov"]
[[package]]
name = "gitdb"
version = "4.0.10"
description = "Git Object Database"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
{file = "gitdb-4.0.10-py3-none-any.whl", hash = "sha256:c286cf298426064079ed96a9e4a9d39e7f3e9bf15ba60701e95f5492f28415c7"},
{file = "gitdb-4.0.10.tar.gz", hash = "sha256:6eb990b69df4e15bad899ea868dc46572c3f75339735663b81de79b06f17eb9a"},
]
[package.dependencies]
smmap = ">=3.0.1,<6"
[[package]]
name = "gitpython"
version = "3.1.30"
description = "GitPython is a python library used to interact with Git repositories"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
{file = "GitPython-3.1.30-py3-none-any.whl", hash = "sha256:cd455b0000615c60e286208ba540271af9fe531fa6a87cc590a7298785ab2882"},
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[package.dependencies]
gitdb = ">=4.0.1,<5"
[[package]]
name = "identify"
version = "2.5.12"
description = "File identification library for Python"
category = "dev"
optional = false
python-versions = ">=3.7"
files = [
{file = "identify-2.5.12-py2.py3-none-any.whl", hash = "sha256:e8a400c3062d980243d27ce10455a52832205649bbcaf27ffddb3dfaaf477bad"},
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[package.extras]
license = ["ukkonen"]
[[package]]
name = "isort"
version = "5.11.4"
description = "A Python utility / library to sort Python imports."
category = "dev"
optional = false
python-versions = ">=3.7.0"
files = [
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]
[package.extras]
colors = ["colorama (>=0.4.3,<0.5.0)"]
pipfile-deprecated-finder = ["pipreqs", "requirementslib"]
plugins = ["setuptools"]
requirements-deprecated-finder = ["pip-api", "pipreqs"]
[[package]]
name = "mccabe"
version = "0.7.0"
description = "McCabe checker, plugin for flake8"
category = "dev"
optional = false
python-versions = ">=3.6"
files = [
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[[package]]
name = "mypy"
version = "0.971"
description = "Optional static typing for Python"
category = "dev"
optional = false
python-versions = ">=3.6"
files = [
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version = "12.6.0"
description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
category = "main"
optional = false
python-versions = ">=3.6.3,<4.0.0"
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commonmark = ">=0.9.0,<0.10.0"
pygments = ">=2.6.0,<3.0.0"
typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.9\""}
[package.extras]
jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"]
[[package]]
name = "setuptools"
version = "65.6.3"
description = "Easily download, build, install, upgrade, and uninstall Python packages"
category = "dev"
optional = false
python-versions = ">=3.7"
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python-versions = "*"
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description = "Virtual Python Environment builder"
category = "dev"
optional = false
python-versions = ">=3.6"
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[package.dependencies]
distlib = ">=0.3.6,<1"
filelock = ">=3.4.1,<4"
platformdirs = ">=2.4,<3"
[package.extras]
docs = ["proselint (>=0.13)", "sphinx (>=5.3)", "sphinx-argparse (>=0.3.2)", "sphinx-rtd-theme (>=1)", "towncrier (>=22.8)"]
testing = ["coverage (>=6.2)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=21.3)", "pytest (>=7.0.1)", "pytest-env (>=0.6.2)", "pytest-freezegun (>=0.4.2)", "pytest-mock (>=3.6.1)", "pytest-randomly (>=3.10.3)", "pytest-timeout (>=2.1)"]
[metadata]
lock-version = "2.0"
python-versions = ">=3.8.1,<4.0"
content-hash = "78e5e2403aaceb237ee187dd395971a4ee3a07af884a3d2be70e201a8285b2f4"

3
poetry.toml Normal file
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@ -0,0 +1,3 @@
[virtualenvs]
create = true
in-project = true

54
pyproject.toml Normal file
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@ -0,0 +1,54 @@
[tool.poetry]
authors = ["Laurent Fainsin <laurentfainsin@protonmail.com>"]
description = ""
license = "MIT"
name = "projet-be"
version = "0.1.0"
[tool.poetry.dependencies]
numpy = "^1.23.5"
python = ">=3.8.1,<4.0"
rich = "^12.6.0"
opencv-python = "^4.6.0.66"
[tool.poetry.group.dev.dependencies]
Flake8-pyproject = "^1.1.0"
bandit = "^1.7.4"
black = "^22.8.0"
flake8 = "^5.0.4"
flake8-docstrings = "^1.6.0"
isort = "^5.10.1"
mypy = "^0.971"
pre-commit = "^2.20.0"
[build-system]
build-backend = "poetry.core.masonry.api"
requires = ["poetry-core>=1.0.0"]
[tool.flake8]
# rules ignored
extend-ignore = ["W503", "D401", "D100", "D104"]
per-file-ignores = ["__init__.py:F401"]
# black
ignore = "E203"
max-line-length = 120
[tool.black]
exclude = '''
/(
\.git
\.venv
)/
'''
include = '\.pyi?$'
line-length = 120
target-version = ["py310"]
[tool.isort]
multi_line_output = 3
profile = "black"
[tool.mypy]
python_version = "3.10"
warn_return_any = true
warn_unused_configs = true

13
shell.nix Normal file
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@ -0,0 +1,13 @@
{ pkgs ? import <nixpkgs> { } }:
pkgs.mkShell {
buildInputs = with pkgs; [
poetry
python3
python310Packages.numpy
(python310Packages.opencv4.override {
enableGtk2 = true;
gtk2 = pkgs.gtk2;
})
];
}