diff --git a/poetry.lock b/poetry.lock index bcf0f65..582faca 100644 --- a/poetry.lock +++ b/poetry.lock @@ -24,7 +24,7 @@ multidict = ">=4.5,<7.0" yarl = ">=1.0,<2.0" [package.extras] -speedups = ["aiodns", "brotli", "cchardet"] +speedups = ["Brotli", "aiodns", "cchardet"] [[package]] name = "aiosignal" @@ -142,6 +142,17 @@ category = "main" optional = false python-versions = "~=3.7" +[[package]] +name = "Cerberus" +version = "1.3.4" +description = "Lightweight, extensible schema and data validation tool for Python dictionaries." +category = "main" +optional = false +python-versions = ">=2.7" + +[package.dependencies] +setuptools = "*" + [[package]] name = "certifi" version = "2022.6.15" @@ -203,7 +214,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" name = "coloredlogs" version = "15.0.1" description = "Colored terminal output for Python's logging module" -category = "main" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" @@ -380,7 +391,7 @@ python-versions = ">=3.6" smmap = ">=3.0.1,<6" [[package]] -name = "gitpython" +name = "GitPython" version = "3.1.27" description = "GitPython is a python library used to interact with Git repositories" category = "main" @@ -439,11 +450,22 @@ six = ">=1.5.2" [package.extras] protobuf = ["grpcio-tools (>=1.48.1)"] +[[package]] +name = "h5py" +version = "3.7.0" +description = "Read and write HDF5 files from Python" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +numpy = ">=1.14.5" + [[package]] name = "humanfriendly" version = "10.0" description = "Human friendly output for text interfaces using Python" -category = "main" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" @@ -452,7 +474,7 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve [[package]] name = "identify" -version = "2.5.3" +version = "2.5.5" description = "File identification library for Python" category = "dev" optional = false @@ -485,17 +507,17 @@ pillow = ">=8.3.2" all-plugins = ["astropy", "av", "imageio-ffmpeg", "opencv-python", "psutil", "tifffile"] all-plugins-pypy = ["av", "imageio-ffmpeg", "psutil", "tifffile"] build = ["wheel"] -dev = ["black", "flake8", "fsspec", "invoke", "pytest", "pytest-cov"] +dev = ["black", "flake8", "fsspec[github]", "invoke", "pytest", "pytest-cov"] docs = ["numpydoc", "pydata-sphinx-theme", "sphinx"] ffmpeg = ["imageio-ffmpeg", "psutil"] fits = ["astropy"] -full = ["astropy", "av", "black", "flake8", "fsspec", "gdal", "imageio-ffmpeg", "invoke", "itk", "numpydoc", "opencv-python", "psutil", "pydata-sphinx-theme", "pytest", "pytest-cov", "sphinx", "tifffile", "wheel"] +full = ["astropy", "av", "black", "flake8", "fsspec[github]", "gdal", "imageio-ffmpeg", "invoke", "itk", "numpydoc", "opencv-python", "psutil", "pydata-sphinx-theme", "pytest", "pytest-cov", "sphinx", "tifffile", "wheel"] gdal = ["gdal"] itk = ["itk"] linting = ["black", "flake8"] opencv = ["opencv-python"] pyav = ["av"] -test = ["fsspec", "invoke", "pytest", "pytest-cov"] +test = ["fsspec[github]", "invoke", "pytest", "pytest-cov"] tifffile = ["tifffile"] [[package]] @@ -540,7 +562,7 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=6.0)", "pytest-cov", "p [[package]] name = "ipython" -version = "8.4.0" +version = "8.5.0" description = "IPython: Productive Interactive Computing" category = "dev" optional = false @@ -555,7 +577,7 @@ jedi = ">=0.16" matplotlib-inline = "*" pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} pickleshare = "*" -prompt-toolkit = ">=2.0.0,<3.0.0 || >3.0.0,<3.0.1 || >3.0.1,<3.1.0" +prompt-toolkit = ">3.0.1,<3.1.0" pygments = ">=2.4.0" stack-data = "*" traitlets = ">=5" @@ -655,7 +677,28 @@ optional = false python-versions = ">=3.7" [[package]] -name = "markdown" +name = "lightning-bolts" +version = "0.5.0" +description = "PyTorch Lightning Bolts is a community contribution for ML researchers." +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +packaging = "*" +pytorch-lightning = ">=1.4.0" +torch = ">=1.7.1" +torchmetrics = ">=0.4.1" + +[package.extras] +dev = ["Pillow", "ale-py (>=0.7)", "atari-py (==0.2.6)", "atari-py (>=0.2.0,<0.3.0)", "box2d-py (>=2.3.0,<2.4.0)", "check-manifest", "codecov (>=2.1)", "flake8", "gym[atari] (>=0.17.2,<0.20.0)", "isort (>=5.6.4)", "jsonargparse[signatures]", "matplotlib", "mypy (>=0.790)", "opencv-python-headless", "pre-commit (>=1.0)", "pytest (>=6.0)", "pytest-cov (>2.10)", "scikit-learn (>=0.23)", "scipy", "sparseml", "torchvision (>=0.8.2)", "twine (>=3.2)", "wandb"] +extra = ["Pillow", "atari-py (>=0.2.0,<0.3.0)", "box2d-py (>=2.3.0,<2.4.0)", "gym[atari] (>=0.17.2,<0.20.0)", "matplotlib", "opencv-python-headless", "scikit-learn (>=0.23)", "scipy", "torchvision (>=0.8.2)", "wandb"] +loggers = ["matplotlib", "scipy", "wandb"] +models = ["Pillow", "atari-py (>=0.2.0,<0.3.0)", "box2d-py (>=2.3.0,<2.4.0)", "gym[atari] (>=0.17.2,<0.20.0)", "opencv-python-headless", "scikit-learn (>=0.23)", "torchvision (>=0.8.2)"] +test = ["ale-py (>=0.7)", "atari-py (==0.2.6)", "check-manifest", "codecov (>=2.1)", "flake8", "isort (>=5.6.4)", "jsonargparse[signatures]", "mypy (>=0.790)", "pre-commit (>=1.0)", "pytest (>=6.0)", "pytest-cov (>2.10)", "scikit-learn (>=0.23)", "sparseml", "twine (>=3.2)"] + +[[package]] +name = "Markdown" version = "3.4.1" description = "Python implementation of Markdown." category = "main" @@ -669,7 +712,7 @@ importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""} testing = ["coverage", "pyyaml"] [[package]] -name = "markupsafe" +name = "MarkupSafe" version = "2.1.1" description = "Safely add untrusted strings to HTML/XML markup." category = "main" @@ -783,6 +826,9 @@ category = "dev" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" +[package.dependencies] +setuptools = "*" + [[package]] name = "numpy" version = "1.23.2" @@ -840,7 +886,7 @@ sympy = "*" name = "onnxruntime-gpu" version = "1.12.1" description = "ONNX Runtime is a runtime accelerator for Machine Learning models" -category = "main" +category = "dev" optional = false python-versions = "*" @@ -852,6 +898,25 @@ packaging = "*" protobuf = "*" sympy = "*" +[[package]] +name = "onnxruntime-training" +version = "1.12.0" +description = "ONNX Runtime is a runtime accelerator for Machine Learning models" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +cerberus = "*" +flatbuffers = "*" +h5py = "*" +numpy = ">=1.16.6" +onnx = "*" +packaging = "*" +protobuf = ">=3.12.2,<=3.20.1" +setuptools = ">=41.4.0" +sympy = "*" + [[package]] name = "opencv-python-headless" version = "4.6.0.66" @@ -927,7 +992,7 @@ optional = false python-versions = "*" [[package]] -name = "pillow" +name = "Pillow" version = "9.2.0" description = "Python Imaging Library (Fork)" category = "main" @@ -1001,7 +1066,7 @@ python-versions = ">=3.5" [[package]] name = "psutil" -version = "5.9.1" +version = "5.9.2" description = "Cross-platform lib for process and system monitoring in Python." category = "main" optional = false @@ -1077,7 +1142,7 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] -name = "pydeprecate" +name = "pyDeprecate" version = "0.3.2" description = "Deprecation tooling" category = "main" @@ -1085,7 +1150,7 @@ optional = false python-versions = ">=3.6" [[package]] -name = "pygments" +name = "Pygments" version = "2.13.0" description = "Pygments is a syntax highlighting package written in Python." category = "main" @@ -1110,7 +1175,7 @@ diagrams = ["jinja2", "railroad-diagrams"] name = "pyreadline3" version = "3.4.1" description = "A python implementation of GNU readline." -category = "main" +category = "dev" optional = false python-versions = "*" @@ -1146,10 +1211,10 @@ tqdm = ">=4.57.0" typing-extensions = ">=4.0.0" [package.extras] -all = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "comet-ml (>=3.1.12)", "coverage (>=6.4)", "deepspeed (>=0.6.0)", "fairscale (>=0.4.5)", "fastapi", "gcsfs (>=2021.5.0)", "gym[classic_control] (>=0.17.0)", "hivemind (>=1.0.1)", "horovod (>=0.21.2,!=0.24.0)", "hydra-core (>=1.0.5)", "ipython", "jsonargparse[signatures] (>=4.12.0)", "matplotlib (>3.1)", "mlflow (>=1.0.0)", "mypy (==0.971)", "neptune-client (>=0.10.0)", "omegaconf (>=2.0.5)", "onnxruntime", "pandas (>1.0)", "pre-commit (>=1.0)", "psutil", "pytest (>=7.0)", "pytest-cov", "pytest-forked", "pytest-rerunfailures (>=10.2)", "rich (>=10.14.0,!=10.15.0.a)", "scikit-learn (>0.22.1)", "test-tube (>=0.7.5)", "torchtext (>=0.10)", "torchvision (>=0.10)", "uvicorn", "wandb (>=0.10.22)"] +all = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "comet-ml (>=3.1.12)", "coverage (>=6.4)", "deepspeed (>=0.6.0)", "fairscale (>=0.4.5)", "fastapi", "gcsfs (>=2021.5.0)", "gym[classic_control] (>=0.17.0)", "hivemind (>=1.0.1)", "horovod (>=0.21.2,!=0.24.0)", "hydra-core (>=1.0.5)", "ipython[all]", "jsonargparse[signatures] (>=4.12.0)", "matplotlib (>3.1)", "mlflow (>=1.0.0)", "mypy (==0.971)", "neptune-client (>=0.10.0)", "omegaconf (>=2.0.5)", "onnxruntime", "pandas (>1.0)", "pre-commit (>=1.0)", "psutil", "pytest (>=7.0)", "pytest-cov", "pytest-forked", "pytest-rerunfailures (>=10.2)", "rich (>=10.14.0,!=10.15.0.a)", "scikit-learn (>0.22.1)", "test-tube (>=0.7.5)", "torchtext (>=0.10)", "torchvision (>=0.10)", "uvicorn", "wandb (>=0.10.22)"] deepspeed = ["deepspeed (>=0.6.0)"] dev = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "comet-ml (>=3.1.12)", "coverage (>=6.4)", "fastapi", "gcsfs (>=2021.5.0)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.12.0)", "matplotlib (>3.1)", "mlflow (>=1.0.0)", "mypy (==0.971)", "neptune-client (>=0.10.0)", "omegaconf (>=2.0.5)", "onnxruntime", "pandas (>1.0)", "pre-commit (>=1.0)", "psutil", "pytest (>=7.0)", "pytest-cov", "pytest-forked", "pytest-rerunfailures (>=10.2)", "rich (>=10.14.0,!=10.15.0.a)", "scikit-learn (>0.22.1)", "test-tube (>=0.7.5)", "torchtext (>=0.10)", "uvicorn", "wandb (>=0.10.22)"] -examples = ["gym[classic_control] (>=0.17.0)", "ipython", "torchvision (>=0.10)"] +examples = ["gym[classic_control] (>=0.17.0)", "ipython[all]", "torchvision (>=0.10)"] extra = ["gcsfs (>=2021.5.0)", "hydra-core (>=1.0.5)", "jsonargparse[signatures] (>=4.12.0)", "matplotlib (>3.1)", "omegaconf (>=2.0.5)", "rich (>=10.14.0,!=10.15.0.a)", "torchtext (>=0.10)"] fairscale = ["fairscale (>=0.4.5)"] hivemind = ["hivemind (>=1.0.1)"] @@ -1159,7 +1224,7 @@ strategies = ["deepspeed (>=0.6.0)", "fairscale (>=0.4.5)", "hivemind (>=1.0.1)" test = ["cloudpickle (>=1.3)", "codecov (>=2.1)", "coverage (>=6.4)", "fastapi", "mypy (==0.971)", "onnxruntime", "pandas (>1.0)", "pre-commit (>=1.0)", "psutil", "pytest (>=7.0)", "pytest-cov", "pytest-forked", "pytest-rerunfailures (>=10.2)", "scikit-learn (>0.22.1)", "uvicorn"] [[package]] -name = "pywavelets" +name = "PyWavelets" version = "1.3.0" description = "PyWavelets, wavelet transform module" category = "main" @@ -1178,7 +1243,7 @@ optional = false python-versions = "*" [[package]] -name = "pyyaml" +name = "PyYAML" version = "6.0" description = "YAML parser and emitter for Python" category = "main" @@ -1292,7 +1357,7 @@ tifffile = ">=2019.7.26" [package.extras] data = ["pooch (>=1.3.0)"] docs = ["cloudpickle (>=0.2.1)", "dask[array] (>=0.15.0,!=2.17.0)", "ipywidgets", "kaleido", "matplotlib (>=3.3)", "myst-parser", "numpydoc (>=1.0)", "pandas (>=0.23.0)", "plotly (>=4.14.0)", "pooch (>=1.3.0)", "pytest-runner", "scikit-learn", "seaborn (>=0.7.1)", "sphinx (>=1.8)", "sphinx-copybutton", "sphinx-gallery (>=0.10.1)", "tifffile (>=2020.5.30)"] -optional = ["astropy (>=3.1.2)", "cloudpickle (>=0.2.1)", "dask[array] (>=1.0.0,!=2.17.0)", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pyamg", "qtpy", "simpleitk"] +optional = ["SimpleITK", "astropy (>=3.1.2)", "cloudpickle (>=0.2.1)", "dask[array] (>=1.0.0,!=2.17.0)", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pyamg", "qtpy"] test = ["asv", "codecov", "flake8", "matplotlib (>=3.0.3)", "pooch (>=1.3.0)", "pytest (>=5.2.0)", "pytest-cov (>=2.7.0)", "pytest-faulthandler", "pytest-localserver"] [[package]] @@ -1328,7 +1393,7 @@ numpy = ">=1.18.5,<1.25.0" [[package]] name = "sentry-sdk" -version = "1.9.7" +version = "1.9.8" description = "Python client for Sentry (https://sentry.io)" category = "main" optional = false @@ -1369,6 +1434,19 @@ python-versions = ">=3.7" [package.extras] test = ["pytest"] +[[package]] +name = "setuptools" +version = "65.3.0" +description = "Easily download, build, install, upgrade, and uninstall Python packages" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] + [[package]] name = "setuptools-scm" version = "6.4.2" @@ -1379,6 +1457,7 @@ python-versions = ">=3.6" [package.dependencies] packaging = ">=20.0" +setuptools = "*" tomli = ">=1.0.0" [package.extras] @@ -1453,9 +1532,11 @@ markdown = ">=2.6.8" numpy = ">=1.12.0" protobuf = ">=3.9.2,<3.20" requests = ">=2.21.0,<3" +setuptools = ">=41.0.0" tensorboard-data-server = ">=0.6.0,<0.7.0" tensorboard-plugin-wit = ">=1.6.0" werkzeug = ">=1.0.1" +wheel = ">=0.26" [[package]] name = "tensorboard-data-server" @@ -1581,7 +1662,7 @@ python-versions = ">= 3.7" [[package]] name = "tqdm" -version = "4.64.0" +version = "4.64.1" description = "Fast, Extensible Progress Meter" category = "main" optional = false @@ -1665,6 +1746,7 @@ PyYAML = "*" requests = ">=2.0.0,<3" sentry-sdk = ">=1.0.0" setproctitle = "*" +setuptools = "*" shortuuid = ">=0.5.0" six = ">=1.13.0" @@ -1688,7 +1770,7 @@ optional = false python-versions = "*" [[package]] -name = "werkzeug" +name = "Werkzeug" version = "2.2.2" description = "The comprehensive WSGI web application library." category = "main" @@ -1701,6 +1783,17 @@ MarkupSafe = ">=2.1.1" [package.extras] watchdog = ["watchdog"] +[[package]] +name = "wheel" +version = "0.37.1" +description = "A built-package format for Python" +category = "main" +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" + +[package.extras] +test = ["pytest (>=3.0.0)", "pytest-cov"] + [[package]] name = "yarl" version = "1.8.1" @@ -1728,7 +1821,7 @@ testing = ["func-timeout", "jaraco.itertools", "pytest (>=6)", "pytest-black (>= [metadata] lock-version = "1.1" python-versions = ">=3.8,<3.11" -content-hash = "a937d2dadd3250c71c1d8a43a3a4a72ac53e6f3793d856c17a4f4f199de71d0b" +content-hash = "7bfd78b5b905b80524e0e85692f28b29f7b5a0fa6ad395ab31dc5d0d2d61f60d" [metadata.files] absl-py = [ @@ -1866,6 +1959,9 @@ cachetools = [ {file = "cachetools-5.2.0-py3-none-any.whl", hash = "sha256:f9f17d2aec496a9aa6b76f53e3b614c965223c061982d434d160f930c698a9db"}, {file = "cachetools-5.2.0.tar.gz", hash = "sha256:6a94c6402995a99c3970cc7e4884bb60b4a8639938157eeed436098bf9831757"}, ] +Cerberus = [ + {file = "Cerberus-1.3.4.tar.gz", hash = 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"sha256:07b21e274de4c637f3e3b7104694e53260b5fc10d51fb3ec5fed1da8e0f754e3"}, diff --git a/pyproject.toml b/pyproject.toml index 79d825d..d3418c6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,19 +6,21 @@ version = "1.0.0" [tool.poetry.dependencies] albumentations = "^1.2.1" +lightning-bolts = "^0.5.0" numpy = "^1.23.2" onnx = "^1.12.0" +onnxruntime-training = "^1.12.0" +pycocotools = "^2.0.4" python = ">=3.8,<3.11" pytorch-lightning = "^1.7.4" +rich = "^12.5.1" torch = "^1.12.1" torchmetrics = "^0.9.3" torchvision = "^0.13.1" wandb = "^0.13.2" -rich = "^12.5.1" -pycocotools = "^2.0.4" [tool.poetry.dev-dependencies] -black = { extras = ["jupyter"], version = "^22.8.0" } +black = {extras = ["jupyter"], version = "^22.8.0"} ipykernel = "^6.15.2" isort = "^5.10.1" matplotlib = "^3.5.3"