f5

Former-commit-id: c3c20fee02acb1c9eec7332ec173e05e9df9fb99 [formerly a0bdb02a4ec4299e767d011e86970412be10d25c]
Former-commit-id: 495e626a762ffa4d8df3f66dd6e3d7c896950f94

src/train.py

@@ -5,7 +5,6 @@ from pathlib import Path
 import albumentations as A
 import torch
 import torch.nn as nn
-import torch.nn.functional as F
 from albumentations.pytorch import ToTensorV2
 from torch import optim
 from torch.utils.data import DataLoader
@@ -112,16 +111,16 @@ def main():
             A.Resize(500, 500),
             A.Flip(),
             A.ColorJitter(),
-            RandomPaste(5, 0.2, DIR_SPHERE_IMG, DIR_SPHERE_MASK),
+            RandomPaste(5, DIR_SPHERE_IMG, DIR_SPHERE_MASK),
             A.ISONoise(),
             A.ToFloat(max_value=255),
-            A.pytorch.ToTensorV2(),
+            ToTensorV2(),
         ],
     )
     tf_valid = A.Compose(
         [
             A.Resize(500, 500),
-            RandomPaste(5, 0.2, DIR_SPHERE_IMG, DIR_SPHERE_MASK),
+            RandomPaste(5, DIR_SPHERE_IMG, DIR_SPHERE_MASK),
             A.ToFloat(max_value=255),
             ToTensorV2(),
         ],
@@ -132,19 +131,18 @@ def main():
     ds_valid = SphereDataset(image_dir=DIR_VALID_IMG, transform=tf_valid)
 
     # 3. Create data loaders
-    loader_args = dict(batch_size=args.batch_size, num_workers=4, pin_memory=True)
+    loader_args = dict(batch_size=args.batch_size, num_workers=5, pin_memory=True)
     train_loader = DataLoader(ds_train, shuffle=True, **loader_args)
     val_loader = DataLoader(ds_valid, shuffle=False, drop_last=True, **loader_args)
 
     # 4. Set up the optimizer, the loss, the learning rate scheduler and the loss scaling for AMP
     optimizer = optim.RMSprop(net.parameters(), lr=args.lr, weight_decay=1e-8, momentum=0.9)
-    scheduler = optim.lr_scheduler.ReduceLROnPlateau(optimizer, "max", patience=2)  # goal: maximize Dice score
+    scheduler = optim.lr_scheduler.ReduceLROnPlateau(optimizer, "max", patience=2)
     grad_scaler = torch.cuda.amp.GradScaler(enabled=args.amp)
     criterion = nn.BCEWithLogitsLoss()
 
-    # connect to wandb
     wandb.init(
-        project="U-Net",
+        project="U-Net-tmp",
         config=dict(
             epochs=args.epochs,
             batch_size=args.batch_size,
@@ -177,24 +175,29 @@ def main():
                         "the images are loaded correctly."
                     )
 
+                    # transfer images to device
                     images = images.to(device=device)
                     true_masks = true_masks.unsqueeze(1).to(device=device)
 
+                    # forward
                     with torch.cuda.amp.autocast(enabled=args.amp):
-                        masks_pred = net(images)
-                        train_loss = criterion(masks_pred, true_masks)  # TODO: rajouter le diceloss
+                        pred_masks = net(images)
+                        train_loss = criterion(pred_masks, pred_masks)
 
+                    # backward
                     optimizer.zero_grad(set_to_none=True)
                     grad_scaler.scale(train_loss).backward()
                     grad_scaler.step(optimizer)
                     grad_scaler.update()
 
+                    # update tqdm progress bar
                     pbar.update(images.shape[0])
                     pbar.set_postfix(**{"loss": train_loss.item()})
 
-                    wandb.log(  # log training metrics
+                    # log training metrics
+                    wandb.log(
                         {
-                            "train/epoch": epoch + step / len(train_loader),
+                            "train/epoch": epoch - 1 + step / len(train_loader),
                             "train/train_loss": train_loss,
                         }
                     )
@@ -202,7 +205,9 @@ def main():
                 # Evaluation round
                 val_score = evaluate(net, val_loader, device)
                 scheduler.step(val_score)
-                wandb.log(  # log validation metrics
+
+                # log validation metrics
+                wandb.log(
                     {
                         "val/val_score": val_score,
                     }

src/utils/dataset.py

@@ -19,11 +19,11 @@ class SphereDataset(Dataset):
         img_path = os.path.join(self.image_dir, self.images[index])
         image = np.array(Image.open(img_path).convert("RGB"), dtype=np.uint8)
 
-        mask = np.zeros((image.shape[0], image.shape[1]), dtype=np.float32)
+        mask = np.zeros((image.shape[0], image.shape[1]), dtype=np.uint8)
 
         if self.transform is not None:
             augmentations = self.transform(image=image, mask=mask)
             image = augmentations["image"]
-            mask = augmentations["mask"]
+            mask = augmentations["mask"].float()
 
         return image, mask