PointMLP/classification_ScanObjectNN/utils/misc.py

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2021-10-04 07:22:15 +00:00
'''Some helper functions for PyTorch, including:
- get_mean_and_std: calculate the mean and std value of dataset.
- msr_init: net parameter initialization.
- progress_bar: progress bar mimic xlua.progress.
'''
import errno
import os
import sys
import time
import math
import torch
import shutil
import numpy as np
import random
import torch.nn.functional as F
import torch.nn as nn
import torch.nn.init as init
from torch.autograd import Variable
__all__ = ['get_mean_and_std', 'init_params', 'mkdir_p', 'AverageMeter',
'progress_bar','save_model',"save_args","set_seed", "IOStream", "cal_loss"]
def get_mean_and_std(dataset):
'''Compute the mean and std value of dataset.'''
dataloader = trainloader = torch.utils.data.DataLoader(dataset, batch_size=1, shuffle=True, num_workers=2)
mean = torch.zeros(3)
std = torch.zeros(3)
print('==> Computing mean and std..')
for inputs, targets in dataloader:
for i in range(3):
mean[i] += inputs[:,i,:,:].mean()
std[i] += inputs[:,i,:,:].std()
mean.div_(len(dataset))
std.div_(len(dataset))
return mean, std
def init_params(net):
'''Init layer parameters.'''
for m in net.modules():
if isinstance(m, nn.Conv2d):
init.kaiming_normal(m.weight, mode='fan_out')
if m.bias:
init.constant(m.bias, 0)
elif isinstance(m, nn.BatchNorm2d):
init.constant(m.weight, 1)
init.constant(m.bias, 0)
elif isinstance(m, nn.Linear):
init.normal(m.weight, std=1e-3)
if m.bias:
init.constant(m.bias, 0)
def mkdir_p(path):
'''make dir if not exist'''
try:
os.makedirs(path)
except OSError as exc: # Python >2.5
if exc.errno == errno.EEXIST and os.path.isdir(path):
pass
else:
raise
class AverageMeter(object):
"""Computes and stores the average and current value
Imported from https://github.com/pytorch/examples/blob/master/imagenet/main.py#L247-L262
"""
def __init__(self):
self.reset()
def reset(self):
self.val = 0
self.avg = 0
self.sum = 0
self.count = 0
def update(self, val, n=1):
self.val = val
self.sum += val * n
self.count += n
self.avg = self.sum / self.count
TOTAL_BAR_LENGTH = 65.
last_time = time.time()
begin_time = last_time
def progress_bar(current, total, msg=None):
global last_time, begin_time
if current == 0:
begin_time = time.time() # Reset for new bar.
cur_len = int(TOTAL_BAR_LENGTH*current/total)
rest_len = int(TOTAL_BAR_LENGTH - cur_len) - 1
sys.stdout.write(' [')
for i in range(cur_len):
sys.stdout.write('=')
sys.stdout.write('>')
for i in range(rest_len):
sys.stdout.write('.')
sys.stdout.write(']')
cur_time = time.time()
step_time = cur_time - last_time
last_time = cur_time
tot_time = cur_time - begin_time
L = []
L.append(' Step: %s' % format_time(step_time))
L.append(' | Tot: %s' % format_time(tot_time))
if msg:
L.append(' | ' + msg)
msg = ''.join(L)
sys.stdout.write(msg)
# for i in range(term_width-int(TOTAL_BAR_LENGTH)-len(msg)-3):
# sys.stdout.write(' ')
# Go back to the center of the bar.
# for i in range(term_width-int(TOTAL_BAR_LENGTH/2)+2):
# sys.stdout.write('\b')
sys.stdout.write(' %d/%d ' % (current+1, total))
if current < total-1:
sys.stdout.write('\r')
else:
sys.stdout.write('\n')
sys.stdout.flush()
def format_time(seconds):
days = int(seconds / 3600/24)
seconds = seconds - days*3600*24
hours = int(seconds / 3600)
seconds = seconds - hours*3600
minutes = int(seconds / 60)
seconds = seconds - minutes*60
secondsf = int(seconds)
seconds = seconds - secondsf
millis = int(seconds*1000)
f = ''
i = 1
if days > 0:
f += str(days) + 'D'
i += 1
if hours > 0 and i <= 2:
f += str(hours) + 'h'
i += 1
if minutes > 0 and i <= 2:
f += str(minutes) + 'm'
i += 1
if secondsf > 0 and i <= 2:
f += str(secondsf) + 's'
i += 1
if millis > 0 and i <= 2:
f += str(millis) + 'ms'
i += 1
if f == '':
f = '0ms'
return f
def save_model(net, epoch, path, acc, is_best, **kwargs):
state = {
'net': net.state_dict(),
'epoch': epoch,
'acc': acc
}
for key, value in kwargs.items():
state[key] = value
filepath = os.path.join(path, "last_checkpoint.pth")
torch.save(state, filepath)
if is_best:
shutil.copyfile(filepath, os.path.join(path, 'best_checkpoint.pth'))
def save_args(args):
file = open(os.path.join(args.checkpoint, 'args.txt'), "w")
for k, v in vars(args).items():
file.write(f"{k}:\t {v}\n")
file.close()
def set_seed(seed=None):
if seed is None:
return
random.seed(seed)
os.environ['PYTHONHASHSEED'] = ("%s" % seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed(seed)
torch.cuda.manual_seed_all(seed)
torch.backends.cudnn.benchmark = False
torch.backends.cudnn.deterministic = True
# create a file and write the text into it
class IOStream():
def __init__(self, path):
self.f = open(path, 'a')
def cprint(self, text):
print(text)
self.f.write(text+'\n')
self.f.flush()
def close(self):
self.f.close()
def cal_loss(pred, gold, smoothing=True):
''' Calculate cross entropy loss, apply label smoothing if needed. '''
gold = gold.contiguous().view(-1)
if smoothing:
eps = 0.2
n_class = pred.size(1)
one_hot = torch.zeros_like(pred).scatter(1, gold.view(-1, 1), 1)
one_hot = one_hot * (1 - eps) + (1 - one_hot) * eps / (n_class - 1)
log_prb = F.log_softmax(pred, dim=1)
loss = -(one_hot * log_prb).sum(dim=1).mean()
else:
loss = F.cross_entropy(pred, gold, reduction='mean')
return loss